diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..cb5e4c18c4c5c8844c1ca0ef021baadff76803e5
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,4 @@
+node_modules
+temp
+.DS_Store
+.idea
diff --git a/README.md b/README.md
index f431870ef8d1322931fd61459653642e4bcab588..c383cadb80ffa78ab9cd8c84bcebbfa61f4969b2 100644
--- a/README.md
+++ b/README.md
@@ -48,7 +48,7 @@ TO fetch them:
### Add all the examples to an OCFL repository
To make all the example from calcyte:
-- `make all REPO_PATH=~/working/ocfl-demo/repo SRC_PATH=~/working/ocfl-test-data/src`
+- `make index REPO_PATH=~/working/ocfl-demo/repo SRC_PATH=~/working/ocfl-test-data/src`
This will:
- Generate RO-Crates for all the examples at `~/working/calcyte.js/test_data/`
@@ -63,8 +63,6 @@ This will:
### Port legacy datasets from the UTS Research Data Repository
-h
-
### Run with data downloaded from Research Data Australia
diff --git a/makefile b/makefile
index 91c8d1cea8e8e97d43d00483509471643f253b22..f97373cd3eb8efebb2bb95762a9aca9252bd8e67 100644
--- a/makefile
+++ b/makefile
@@ -1,34 +1,88 @@
-all: sample glop GTM luckett index
+all: setup sample glop GTM luckett hasan grace landsat eco carter DVTSD MDM_AED stud vic MDM_AED f2f ftir book dharmae ftir pedestrian
-index:
+
+setup: clean
+ cp ~/working/ro-crate-js/lib/crate.js $(SRC_PATH)
+
+index:
node ro-crate-deposit.js --repo=$(REPO_PATH) $(SRC_PATH)/*
node make-ocfl-index.js --repo $(REPO_PATH)
-sample:
- find $(SRC_PATH)/sample -name ~* -delete
- find $(SRC_PATH)/sample -name .DS_Store -delete
- calcyfy -r $(SRC_PATH)/sample -c https://data.research.uts.edu.au/examples/ro-crate/0.2
+clean:
+ #find $(SRC_PATH) -name ~* -delete
+ #find $(SRC_PATH) .DS_Store -delete
+
+sample: clean
+ calcyfy -r $(SRC_PATH)/sample -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+
+glop: clean
+ calcyfy -r $(SRC_PATH)/Glop_Pot -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+ # TODO: needs a license
+
+GTM: clean
+ calcyfy -r $(SRC_PATH)/GTM -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+luckett: clean
+ calcyfy -r $(SRC_PATH)/luckett -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+hasan: clean
+ calcyfy -r $(SRC_PATH)/TCSVT-Hasan -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+grace: clean
+
+
+ #TODO: Error with creators - needs debugging
+ calcyfy -r $(SRC_PATH)/zunyi_xie_grace -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+landsat: clean
+
+ calcyfy -r $(SRC_PATH)/landsat -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
-glop:
- find $(SRC_PATH)/Glop_Pot -name ~* -delete
- find $(SRC_PATH)/Glop_Pot -name .DS_Store -delete
- calcyfy -r $(SRC_PATH)/Glop_Pot -c https://data.research.uts.edu.au/examples/ro-crate/0.2
+MDM_AED: clean
+ calcyfy -r $(SRC_PATH)/MDM_AED -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
-GTM:
- find $(SRC_PATH)/GTM -name ~* -delete
- find $(SRC_PATH)/GTM -name .DS_Store -delete
- calcyfy -r $(SRC_PATH)/GTM -c https://data.research.uts.edu.au/examples/ro-crate/0.2
+stud: clean
+ calcyfy -r $(SRC_PATH)/IntStudStenberg -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
-luckett:
- find $(SRC_PATH)/luckett -name ~* -delete
- find $(SRC_PATH)/luckett -name .DS_Store -delete
- calcyfy -r $(SRC_PATH)/luckett -c https://data.research.uts.edu.au/examples/ro-crate/0.2
-pull:
+carter: clean
+ calcyfy -r $(SRC_PATH)/Carter_APM -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+ calcyfy -r $(SRC_PATH)/Carter_QAA -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+eco: clean
+ calcyfy -r $(SRC_PATH)/ecohydrology2014 -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+ftir:
+ # No data with this one - add it on server?
+ calcyfy -r $(SRC_PATH)/ftir -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+vic: clean
+ calcyfy -r $(SRC_PATH)/Victoria_Arch -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+book: clean
+ calcyfy $(SRC_PATH)/IE4783007 -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+f2f: clean
+ calcyfy $(SRC_PATH)/farms_to_freeways -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+
+dharmae: clean
+ calcyfy $(SRC_PATH)/dharmae -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+pedestrian: clean
+ calcyfy $(SRC_PATH)/pedestrian_d3 -c https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
+
+pull:
# WARNING - this is *BIG*
mkdir -p $(SRC_PATH)
cd $(SRC_PATH)
- wget -r -np -nH --cut-dirs=3 https://data.research.uts.edu.au/examples/ro-crate/examples/src/
+ wget -r -np -nH --cut-dirs=3 https://data.research.uts.edu.au/examples/ro-crate/examples/src/crate.js
cd -
+todo: clean
+ # file:///Users/124411/working/ro-crate-examples/src/crate.jscuration/
+
+
+
diff --git a/package-lock.json b/package-lock.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b2ecad2c69ac88dc6a7bbb12cc53be5b006c8bd
--- /dev/null
+++ b/package-lock.json
@@ -0,0 +1,2673 @@
+{
+ "name": "ocfl-demos",
+ "version": "1.0.0",
+ "lockfileVersion": 1,
+ "requires": true,
+ "dependencies": {
+ "@types/node": {
+ "version": "12.7.4",
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+ "a-sync-waterfall": {
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+}
diff --git a/ro-crate-deposit.js b/ro-crate-deposit.js
index 493f7f76398130c6ac3df2e072f3b34f943fe01b..90d73ea92473dba6ab44c249846327b05547deb3 100644
--- a/ro-crate-deposit.js
+++ b/ro-crate-deposit.js
@@ -1,6 +1,5 @@
const path = require('path');
const fs = require('fs-extra');
-const ocfl = require('ocfl');
const OCFLRepository = require('ocfl').Repository;
const uuid = require('uuid/v4');
const argv = require('yargs').argv;
diff --git a/uts-migration.js b/uts-migration.js
new file mode 100644
index 0000000000000000000000000000000000000000..568702f27da35b0bff547ee5ccc55ceab2aeb8d4
--- /dev/null
+++ b/uts-migration.js
@@ -0,0 +1,96 @@
+/* Migrate legacy UTS datasets from a directory to an OCFL reposticory */
+
+
+const path = require('path');
+const fs = require('fs-extra');
+const ocfl = require('ocfl');
+const OCFLRepository = require('ocfl').Repository;
+const uuid = require('uuid/v4');
+const argv = require('yargs').argv;
+const ROCrate = require('ro-crate').ROCrate;
+const rimraf = require('rimraf');
+
+
+async function connectRepo(repoPath) {
+ const repo = new OCFLRepository();
+ try {
+ const stat = await fs.stat(repoPath);
+ if (stat.isDirectory()) {
+ await repo.load(repoPath);
+ return repo;
+ } else {
+ console.error(`${repoPath} is not a directory`);
+ process.exit(-1);
+ }
+ } catch (e) {
+ await fs.mkdir(repoPath);
+ await repo.create(repoPath);
+ return repo;
+ }
+}
+
+function removeDir(dir) {
+ rimraf(dir, {}, (err) => {
+ if (err) {
+ return Promise.reject(err);
+ } else {
+ return Promise.resolve();
+ }
+ });
+}
+
+// [{"id": " ... ", "doi": "...", "dir": "dir-name of crate", "url": "existing repo URL"}, ...]
+async function addItem(repo, repoName, crateInfo, tempDir) {
+ // Make a copy of the dataset - assume it has both index.html AND ro-crate stuff in it
+ const roCrateFile = path.join(tempDir, 'ro-crate-metadata.jsonld');
+ const roCrateFileSrc = path.join(crateInfo.dir, 'ro-crate-metadata.jsonld');
+ const previewFile = path.join(tempDir, 'ro-crate-preview.html');
+ const previewFileSrc = path.join(crateInfo.dir, 'ro-crate-preview.html');
+ const indexFile = path.join(tempDir, 'index.html');
+ const catalogWildCard = path.join(tempDir, 'CATALOG*');
+
+ await fs.copy(crateInfo.dir, tempDir);
+ await fs.remove(roCrateFile);
+ await fs.remove(previewFile);
+ await repo.importNewObjectDir(crateInfo.id, tempDir);
+
+ // Remove legacy index file and add RO-Crate files
+ await fs.remove(indexFile);
+ await removeDir(catalogWildCard);
+ await fs.copy(roCrateFileSrc, roCrateFile);
+ await fs.copy(previewFileSrc, previewFile);
+
+
+ // Make a crate
+ const jsonld = await fs.readJson(roCrateFile);
+ const crate = new ROCrate(jsonld);
+ crate.index();
+ const dataset = crate.getRootDataset();
+ crate.addIdentifier({name: repoName, identifier: crateInfo.id});
+ if (!(dataset.identifier.includes(crateInfo.doi))) {
+ dataset.identifier.push(crateInfo.doi);
+ }
+ await fs.writeJson(roCrateFile, crate.getJson(), {spaces: 2});
+ await repo.importNewObjectDir(crateInfo.id, tempDir);
+ console.log(`Added ${roCrateFile} metadata with identifier ${crateInfo.id}`);
+ //
+}
+
+
+async function main() {
+ const repoPath = argv.repo || 'ocfl_demo';
+ const repoName = argv.name || 'ocfl_demo';
+ const temp = argv.temp || 'temp';
+ const repo = await connectRepo(repoPath);
+ const crateList = await fs.readJson(argv.input);
+ for (let crateInfo of crateList) {
+ if (!crateInfo.skip) {
+ const tempDir = path.join(temp, path.basename(crateInfo.dir));
+ await addItem(repo, repoName, crateInfo, tempDir);
+ }
+ }
+}
+
+
+main();
+
diff --git a/uts_data.json b/uts_data.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f09b235357a8dd8bf74d4cde157991874449eae
--- /dev/null
+++ b/uts_data.json
@@ -0,0 +1,14 @@
+[
+ {
+ "id": "abc",
+ "doi": "http://doi/1",
+ "dir": "/Users/124411/working/ro-crate-examples/src/UTS/luckett",
+ "url": "existing repo URL"
+ },
+ {
+ "id": "abd",
+ "doi": "http://doi/2",
+ "dir": "/Users/124411/working/ro-crate-examples/src/samples/sample",
+ "url": "existing repo URL"
+ }
+]
\ No newline at end of file