Commit 23867816 authored by Chris Evenhuis's avatar Chris Evenhuis
Browse files

Added mote terms

parent 7c81bb50
# Channel
There must be one per channel in the Image, even for a single-plane image.
And information about how each of them was acquired is stored in the various optional Ref elements. Each Logical Channel is composed of one or more
ChannelComponents.
![](./media/ome_xsd_Element_Channel.png)
For example, an entire spectrum in an FTIR experiment may be stored in a single Logical Channel with each discrete wavenumber of the spectrum
constituting a ChannelComponent of the FTIR Logical Channel. An RGB image where the Red, Green and Blue components do not reflect discrete probes but are
instead the output of a color camera would be treated similarly - one Logical channel with three ChannelComponents in this case.
The total number of ChannelComponents for a set of pixels must equal SizeC.
The IlluminationType attribute is a string enumeration which may be set to 'Transmitted', 'Epifluorescence', 'Oblique', or 'NonLinear'.
The user interface logic for labeling a given channel for the user should use the first existing attribute in the following sequence:
Name -> Fluor -> EmissionWavelength -> ChannelComponent/Index.
# Dichroic
The dichromatic beamsplitter or dichroic mirror used for this filter combination.
![](./media/ome_xsd_Element_Dichroic.png)
# Filter Set
Filter set manufacturer specification
![](./media/ome_xsd_Element_FilterSet.png)
#Filter
A filter is either an excitation or emission filters.
There should be one filter element specified per wavelength in the image.
The channel number associated with a filter set is specified in Channel.
![](./media/ome_xsd_Element_Filter.png)
It is based on the FilterSpec type, so has the required attributes Manufacturer, Model, and LotNumber.
It may also contain a Type attribute which may be set to
'LongPass', 'ShortPass', 'BandPass', 'MultiPass',
'Dichroic', 'NeutralDensity', 'Tuneable' or 'Other'.
It can be associated with an optional FilterWheel - Note: this is not the same as a FilterSet
......@@ -6,7 +6,7 @@ It is primarily a container for manufacturer's model and catalog
numbers for the Microscope, LightSource, Detector, Objective and
Filters components.
![](./ome_xsd_Element_Instrument.png)
![](./media/ome_xsd_Element_Instrument.png)
The Objective element contains the additional elements LensNA and Magnification.
The Filters element can be composed either of separate excitation,
......
# Light Soure
Describes a light source
![](./media/ome_xsd_Element_LightSourceGroup.png)
......@@ -5,7 +5,7 @@ Required elements include the lens numerical aperture,
and the magnification, both of which a floating
point (real) numbers.
![](ome_xsd_Element_Objective.png)
![](./media/ome_xsd_Element_Objective.png)
The values are those that are fixed for a particular
objective: either because it has been manufactured to
......
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