diff --git a/CATALOG.json b/CATALOG.json
index be0cf704ff44c692c03966d665b2264a9f36eda0..aa7653112bb192830bb31e809fbeb6ac95c408fe 100644
--- a/CATALOG.json
+++ b/CATALOG.json
@@ -2286,145 +2286,63 @@
       "description": "This is an example DataCrate package for submissing a paper/presentation proposal to Research Object 2018.",
       "hasPart": [
         {
-          "@id": "DataCrate.bib"
+          "@id": "paper.pdf"
         },
         {
-          "@id": "LICENSE"
-        },
-        {
-          "@id": "README.md"
-        },
-        {
-          "@id": "bibliography.bib"
-        },
-        {
-          "@id": "bibliography.csl"
-        },
-        {
-          "@id": "makefile"
-        },
-        {
-          "@id": "metadata.yaml"
-        },
-        {
-          "@id": "paper.md"
-        },
-        {
-          "@id": "template.latex"
+          "@id": "paper.html"
         },
         {
           "@id": "temporal_coverage.png"
         },
         {
-          "@id": "template.html"
-        },
-        {
-          "@id": "build"
+          "@id": "src"
         }
       ],
       "name": "DataCrate Submisssion to the Workshop on Research Objects (RO2018)"
     },
     {
-      "@id": "DataCrate.bib",
-      "@type": "File",
-      "contentSize": "12211",
-      "path": "DataCrate.bib",
-      "creator": {
-        "@id": " https://orcid.org/0000-0002-3545-944X"
-      },
-      "description": "Bibtex file for references for this paper with one nonstandard field: URL",
-      "encodingFormat": "Plain Text File",
-      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111",
-      "filename": [],
-      "license": "https://creativecommons.org/licenses/by/3.0/au/"
-    },
-    {
-      "@id": "LICENSE",
-      "@type": "File",
-      "contentSize": "1072",
-      "path": "LICENSE",
-      "description": "License for the template code used to generate PDF",
-      "encodingFormat": "Plain Text File",
-      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111",
-      "filename": [],
-      "license": {
-        "@id": "LICENSE"
-      },
-      "name": "MIT License",
-      "outputOf": {
-        "@id": "https://github.com/stsewd/ieee-pandoc-template"
-      }
+      "@id": "http://uts.edu.au",
+      "@type": "Organization",
+      "identifier": "http://uts.edu.au",
+      "name": "University of Technology Sdyney"
     },
     {
-      "@id": "README.md",
-      "@type": "File",
-      "contentSize": "2527",
-      "path": "README.md",
-      "description": "README file for IEEE Pandoc Template",
-      "encodingFormat": "Plain Text File",
-      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111",
-      "filename": [],
-      "license": {
-        "@id": "LICENSE"
-      },
-      "outputOf": {
-        "@id": "https://github.com/stsewd/ieee-pandoc-template"
-      }
+      "@id": "http://wsu.edu.au",
+      "@type": "Organization",
+      "identifier": "http://wsu.edu.au",
+      "name": "Western Sydney University"
     },
     {
-      "@id": "bibliography.bib",
-      "@type": "File",
-      "contentSize": "12602",
-      "path": "bibliography.bib",
-      "description": "References for the submission",
-      "encodingFormat": "Plain Text File",
-      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111",
-      "filename": [],
-      "license": "https://creativecommons.org/licenses/by/3.0/au/"
+      "@id": "https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=",
+      "@type": "Person",
+      "email": "duncan.loxton@uts.edu.au",
+      "familyName": "Loxton",
+      "givenName": "Duncan",
+      "identifier": "https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=",
+      "name": "Duncan Loxton"
     },
     {
-      "@id": "bibliography.csl",
-      "@type": "File",
-      " Contributor": {
-        "@id": " https://orcid.org/0000-0002-3545-944X"
-      },
-      "contentSize": "11379",
-      "path": "bibliography.csl",
-      "description": "Citation definition. Modified by Peter Sefton to always show a URL for each reference, but needs more work as it is duplicating URLs",
-      "encodingFormat": "Extensible Markup Language",
-      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/fmt/101",
-      "filename": [],
-      "license": {
-        "@id": "LICENSE"
-      },
-      "outputOf": {
-        "@id": "https://github.com/stsewd/ieee-pandoc-template"
-      }
+      "@id": "https://github.com/stsewd/ieee-pandoc-template",
+      "@type": "Project",
+      "description": "Pandoc template for producing IEEE-styled PDFs from markdown source",
+      "identifier": "https://github.com/stsewd/ieee-pandoc-template",
+      "name": "IEEE Paper Template for Pandoc"
     },
     {
-      "@id": "build",
-      "@type": "Dataset",
-      "path": "build",
-      "description": "Contains a PDF version of source file",
-      "hasPart": [
-        {
-          "@id": "build/paper.pdf"
-        },
-        {
-          "@id": "build/paper.html"
-        },
-        {
-          "@id": "build/temporal_coverage.png"
-        }
-      ],
-      "identifier": "build",
-      "name": " Directory of automatically created files"
+      "@id": "https://orcid.org/0000-0001-5152-5307",
+      "@type": "Person",
+      "affiliation": "University of Technology Sydney",
+      "email": "michael.lynch@uts.edu.au",
+      "familyName": "Lynch",
+      "givenName": "Michael",
+      "identifier": "https://orcid.org/0000-0001-5152-5307",
+      "name": "Michael Lynch"
     },
     {
-      "@id": "build/paper.html",
+      "@id": "paper.html",
       "@type": "File",
       "contentSize": "28571",
-      "path": "build/paper.html",
+      "path": "paper.html",
       "creator": [
         {
           "@id": " https://orcid.org/0000-0002-3545-944X"
@@ -2441,7 +2359,7 @@
       ],
       "description": "HTML Version",
       "encodesCreativeWork": {
-        "@id": "paper.md"
+        "@id": "src/paper.md"
       },
       "encodingFormat": "Hypertext Markup Language",
       "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/fmt/96",
@@ -2450,10 +2368,10 @@
       "name": "DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (HTML)"
     },
     {
-      "@id": "build/paper.pdf",
+      "@id": "paper.pdf",
       "@type": "File",
       "contentSize": "289278",
-      "path": "build/paper.pdf",
+      "path": "paper.pdf",
       "creator": [
         {
           "@id": " https://orcid.org/0000-0002-3545-944X"
@@ -2470,7 +2388,7 @@
       ],
       "description": "PDF verision of DataCrate: a method of packaging, distributing, displaying and archiving Research Objects",
       "encodesCreativeWork": {
-        "@id": "paper.md"
+        "@id": "src/paper.md"
       },
       "encodingFormat": "Acrobat PDF 1.5 - Portable Document Format",
       "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/fmt/19",
@@ -2479,76 +2397,129 @@
       "name": "DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (PDF)"
     },
     {
-      "@id": "build/temporal_coverage.png",
+      "@id": "src",
+      "@type": "Dataset",
+      "path": "src",
+      "description": "Markdown source , metadata and template files",
+      "hasPart": [
+        {
+          "@id": "src/LICENSE"
+        },
+        {
+          "@id": "src/README.md"
+        },
+        {
+          "@id": "src/bibliography.bib"
+        },
+        {
+          "@id": "src/bibliography.csl"
+        },
+        {
+          "@id": "src/makefile"
+        },
+        {
+          "@id": "src/metadata.yaml"
+        },
+        {
+          "@id": "src/paper.md"
+        },
+        {
+          "@id": "src/template.latex"
+        },
+        {
+          "@id": "src/temporal_coverage.png"
+        },
+        {
+          "@id": "src/template.html"
+        }
+      ],
+      "identifier": "src",
+      "name": "Source files"
+    },
+    {
+      "@id": "src/LICENSE",
       "@type": "File",
-      "contentSize": "15998",
-      "path": "build/temporal_coverage.png",
-      "encodingFormat": "Portable Network Graphics",
-      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/fmt/13",
+      "contentSize": "1072",
+      "path": "src/LICENSE",
+      "description": "License for the template code used to generate PDF",
+      "encodingFormat": "Plain Text File",
+      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111",
       "filename": [],
-      "sameAs": {
-        "@id": "temporal_coverage.png"
+      "license": {
+        "@id": "src/LICENSE"
+      },
+      "name": "MIT License",
+      "outputOf": {
+        "@id": "https://github.com/stsewd/ieee-pandoc-template"
       }
     },
     {
-      "@id": "http://uts.edu.au",
-      "@type": "Organization",
-      "identifier": "http://uts.edu.au",
-      "name": "University of Technology Sdyney"
-    },
-    {
-      "@id": "http://wsu.edu.au",
-      "@type": "Organization",
-      "identifier": "http://wsu.edu.au",
-      "name": "Western Sydney University"
-    },
-    {
-      "@id": "https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=",
-      "@type": "Person",
-      "email": "duncan.loxton@uts.edu.au",
-      "familyName": "Loxton",
-      "givenName": "Duncan",
-      "identifier": "https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=",
-      "name": "Duncan Loxton"
+      "@id": "src/README.md",
+      "@type": "File",
+      "contentSize": "2527",
+      "path": "src/README.md",
+      "description": "README file for IEEE Pandoc Template",
+      "encodingFormat": "Plain Text File",
+      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111",
+      "filename": [],
+      "license": {
+        "@id": "src/LICENSE"
+      },
+      "outputOf": {
+        "@id": "https://github.com/stsewd/ieee-pandoc-template"
+      }
     },
     {
-      "@id": "https://github.com/stsewd/ieee-pandoc-template",
-      "@type": "Project",
-      "description": "Pandoc template for producing IEEE-styled PDFs from markdown source",
-      "identifier": "https://github.com/stsewd/ieee-pandoc-template",
-      "name": "IEEE Paper Template for Pandoc"
+      "@id": "src/bibliography.bib",
+      "@type": "File",
+      "contentSize": "12602",
+      "path": "src/bibliography.bib",
+      "description": "References for the submission",
+      "encodingFormat": "Plain Text File",
+      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111",
+      "filename": [],
+      "license": "https://creativecommons.org/licenses/by/3.0/au/"
     },
     {
-      "@id": "https://orcid.org/0000-0001-5152-5307",
-      "@type": "Person",
-      "affiliation": "University of Technology Sydney",
-      "email": "michael.lynch@uts.edu.au",
-      "familyName": "Lynch",
-      "givenName": "Michael",
-      "identifier": "https://orcid.org/0000-0001-5152-5307",
-      "name": "Michael Lynch"
+      "@id": "src/bibliography.csl",
+      "@type": "File",
+      " Contributor": {
+        "@id": " https://orcid.org/0000-0002-3545-944X"
+      },
+      "contentSize": "11379",
+      "path": "src/bibliography.csl",
+      "description": "Citation definition. Modified by Peter Sefton to always show a URL for each reference, but needs more work as it is duplicating URLs",
+      "encodingFormat": "Extensible Markup Language",
+      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/fmt/101",
+      "filename": [],
+      "license": {
+        "@id": "src/LICENSE"
+      },
+      "outputOf": {
+        "@id": "https://github.com/stsewd/ieee-pandoc-template"
+      }
     },
     {
-      "@id": "makefile",
+      "@id": "src/makefile",
       "@type": "File",
       "contentSize": "411",
-      "path": "makefile",
+      "path": "src/makefile",
       "description": "Part of the IEEE Paper Template for Pandoc",
       "encodingFormat": "Plain Text File",
       "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111",
       "filename": [],
       "license": {
-        "@id": "LICENSE"
+        "@id": "src/LICENSE"
       },
       "outputOf": {
         "@id": "https://github.com/stsewd/ieee-pandoc-template"
       }
     },
     {
-      "@id": "metadata.yaml",
+      "@id": "src/metadata.yaml",
       "@type": "File",
       "contentSize": "1625",
-      "path": "metadata.yaml",
+      "path": "src/metadata.yaml",
       "creator": [
         {
           "@id": " https://orcid.org/0000-0002-3545-944X"
@@ -2570,10 +2541,10 @@
       "license": "https://creativecommons.org/licenses/by/3.0/au/"
     },
     {
-      "@id": "paper.md",
+      "@id": "src/paper.md",
       "@type": "File",
       "contentSize": "21054",
-      "path": "paper.md",
+      "path": "src/paper.md",
       "description": "Markdown source file",
       "encodingFormat": "Plain Text File",
       "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111",
@@ -2581,14 +2552,14 @@
       "license": "https://creativecommons.org/licenses/by/3.0/au/",
       "name": "DataCrate: a method of packaging, distributing, displaying and archiving Research Objects",
       "relatedMedia": {
-        "@id": "paper.md"
+        "@id": "src/paper.md"
       }
     },
     {
-      "@id": "template.html",
+      "@id": "src/template.html",
       "@type": "File",
       "contentSize": "607",
-      "path": "template.html",
+      "path": "src/template.html",
       "creator": {
         "@id": " https://orcid.org/0000-0002-3545-944X"
       },
@@ -2599,13 +2570,13 @@
       "license": "https://creativecommons.org/licenses/by/3.0/au/"
     },
     {
-      "@id": "template.latex",
+      "@id": "src/template.latex",
       "@type": "File",
       " Contributor": {
         "@id": " https://orcid.org/0000-0002-3545-944X"
       },
       "contentSize": "7717",
-      "path": "template.latex",
+      "path": "src/template.latex",
       "description": "LaTeX template for generating an IEEE paper from paper.md. Modified by Peter Seftont to highlight links in the PDF on screen",
       "encodingFormat": "LaTeX (Master document)",
       "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/fmt/280",
@@ -2616,10 +2587,10 @@
       }
     },
     {
-      "@id": "temporal_coverage.png",
+      "@id": "src/temporal_coverage.png",
       "@type": "File",
       "contentSize": "15998",
-      "path": "temporal_coverage.png",
+      "path": "src/temporal_coverage.png",
       "creator": {
         "@id": " https://orcid.org/0000-0002-3545-944X"
       },
@@ -2628,6 +2599,18 @@
       "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/fmt/13",
       "filename": []
     },
+    {
+      "@id": "temporal_coverage.png",
+      "@type": "File",
+      "contentSize": "15998",
+      "path": "temporal_coverage.png",
+      "encodingFormat": "Portable Network Graphics",
+      "fileFormat": "http://www.nationalarchives.gov.uk/PRONOM/fmt/13",
+      "filename": [],
+      "sameAs": {
+        "@id": "src/temporal_coverage.png"
+      }
+    },
     {
       "@id": " https://orcid.org/0000-0002-0074-112X",
       "@type": "Person",
diff --git a/CATALOG_datacrate-RO-2018.xlsx b/CATALOG_datacrate-RO-2018.xlsx
index 44c5ad3855717fddc8a4f1f468c94b1ff33b996d..93015ea25eaaf5362373557c6f3f98f0ed4fbd63 100644
Binary files a/CATALOG_datacrate-RO-2018.xlsx and b/CATALOG_datacrate-RO-2018.xlsx differ
diff --git a/build/CATALOG_build.xlsx b/build/CATALOG_build.xlsx
deleted file mode 100644
index 651c01a22f85cc6058204e1eaf3c10e0d4096dff..0000000000000000000000000000000000000000
Binary files a/build/CATALOG_build.xlsx and /dev/null differ
diff --git a/index.html b/index.html
index 15d94a1df7386d56fe5ffeca2163c6610632f3a2..f6c1bbe815425fcd440a90795d19a389568b408a 100644
--- a/index.html
+++ b/index.html
@@ -107,37 +107,19 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/hasPart">hasPart</a>
       </th>
       <td>
-        <a href="#DataCrate.bib">DataCrate.bib</a>
+        <a href="#paper.pdf">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (PDF)</a>
         , 
-        <a href="#LICENSE">MIT License</a>
-        , 
-        <a href="#README.md">README.md</a>
-        , 
-        <a href="#bibliography.bib">bibliography.bib</a>
-        , 
-        <a href="#bibliography.csl">bibliography.csl</a>
-        , 
-        <a href="#makefile">makefile</a>
-        , 
-        <a href="#metadata.yaml">metadata.yaml</a>
-        , 
-        <a href="#paper.md">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</a>
-        , 
-        <a href="#template.latex">template.latex</a>
+        <a href="#paper.html">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (HTML)</a>
         , 
         <a href="#temporal_coverage.png">temporal_coverage.png</a>
         , 
-        <a href="#template.html">template.html</a>
-        , 
-        <a href="#build"> Directory of automatically created files</a>
+        <a href="#src">Source files</a>
       </td>
     </tr>
   </table>
-  <iframe width="80%" height="90%" src="README.md" border="1"></iframe>
-  <hr></hr>
   <h1>Files: </h1>
   <hr></hr>
-  <table class="table" id="DataCrate.bib">
+  <table class="table" id="paper.pdf">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -145,11 +127,17 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/MediaObject">File</a>
       </td>
     </tr>
+    <tr>
+      <th width="20%">
+        <a class="fa fa-external-link" href="http://schema.org/name">name</a>
+      </th>
+      <td>DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (PDF)</td>
+    </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>Bibtex file for references for this paper with one nonstandard field: URL</td>
+      <td>PDF verision of DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</td>
     </tr>
     <tr>
       <th width="20%">
@@ -157,6 +145,12 @@ A machine-readable version of this page is available:
       </th>
       <td>
         <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
+        , 
+        <a href="#https://orcid.org/0000-0001-5152-5307">Michael Lynch</a>
+        , 
+        <a href="# https://orcid.org/0000-0002-0074-112X">Gerard Devine</a>
+        , 
+        <a href="#https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=">Duncan Loxton</a>
       </td>
     </tr>
     <tr>
@@ -164,7 +158,7 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="DataCrate.bib">DataCrate.bib</a>
+        <a href="paper.pdf">paper.pdf</a>
       </td>
     </tr>
     <tr>
@@ -172,14 +166,22 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111">Plain Text File</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/19" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/19">Acrobat PDF 1.5 - Portable Document Format</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>12211</td>
+      <td>289278</td>
+    </tr>
+    <tr>
+      <th width="20%">
+        <a class="fa fa-external-link" href="http://schema.org/encodesCreativeWork">encodesCreativeWork</a>
+      </th>
+      <td>
+        <a href="#src/paper.md">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</a>
+      </td>
     </tr>
     <tr>
       <th width="20%">
@@ -189,7 +191,7 @@ A machine-readable version of this page is available:
     </tr>
   </table>
   <hr></hr>
-  <table class="table" id="LICENSE">
+  <table class="table" id="paper.html">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -201,20 +203,34 @@ A machine-readable version of this page is available:
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/name">name</a>
       </th>
-      <td>MIT License</td>
+      <td>DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (HTML)</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>License for the template code used to generate PDF</td>
+      <td>HTML Version</td>
+    </tr>
+    <tr>
+      <th width="20%">
+        <a class="fa fa-external-link" href="http://schema.org/creator">creator</a>
+      </th>
+      <td>
+        <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
+        , 
+        <a href="#https://orcid.org/0000-0001-5152-5307">Michael Lynch</a>
+        , 
+        <a href="# https://orcid.org/0000-0002-0074-112X">Gerard Devine</a>
+        , 
+        <a href="#https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=">Duncan Loxton</a>
+      </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="LICENSE">LICENSE</a>
+        <a href="paper.html">paper.html</a>
       </td>
     </tr>
     <tr>
@@ -222,32 +238,32 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111">Plain Text File</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/96" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/96">Hypertext Markup Language</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>1072</td>
+      <td>28571</td>
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/license">license</a>
+        <a class="fa fa-external-link" href="http://schema.org/encodesCreativeWork">encodesCreativeWork</a>
       </th>
       <td>
-        <a href="#LICENSE">MIT License</a>
+        <a href="#src/paper.md">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</a>
       </td>
     </tr>
     <tr>
-      <th width="20%">outputOf</th>
-      <td>
-        <a href="#https://github.com/stsewd/ieee-pandoc-template">IEEE Paper Template for Pandoc</a>
-      </td>
+      <th width="20%">
+        <a class="fa fa-external-link" href="http://schema.org/license">license</a>
+      </th>
+      <td>https://creativecommons.org/licenses/by/3.0/au/</td>
     </tr>
   </table>
   <hr></hr>
-  <table class="table" id="README.md">
+  <table class="table" id="temporal_coverage.png">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -255,18 +271,12 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/MediaObject">File</a>
       </td>
     </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/description">description</a>
-      </th>
-      <td>README file for IEEE Pandoc Template</td>
-    </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="README.md">README.md</a>
+        <a href="temporal_coverage.png">temporal_coverage.png</a>
       </td>
     </tr>
     <tr>
@@ -274,76 +284,85 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111">Plain Text File</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/13" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/13">Portable Network Graphics</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>2527</td>
+      <td>15998</td>
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/license">license</a>
+        <a class="fa fa-external-link" href="http://schema.org/sameAs">sameAs</a>
       </th>
       <td>
-        <a href="#LICENSE">MIT License</a>
-      </td>
-    </tr>
-    <tr>
-      <th width="20%">outputOf</th>
-      <td>
-        <a href="#https://github.com/stsewd/ieee-pandoc-template">IEEE Paper Template for Pandoc</a>
+        <a href="#src/temporal_coverage.png">src/temporal_coverage.png</a>
       </td>
     </tr>
   </table>
   <hr></hr>
-  <table class="table" id="bibliography.bib">
+  <table class="table" id="src">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
       <td>
-        <a class="fa fa-external-link" href="http://schema.org/MediaObject">File</a>
+        <a class="fa fa-external-link" href="http://schema.org/Dataset">Dataset</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/description">description</a>
+        <a class="fa fa-external-link" href="http://schema.org/name">name</a>
       </th>
-      <td>References for the submission</td>
+      <td>Source files</td>
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
+        <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>
-        <a href="bibliography.bib">bibliography.bib</a>
-      </td>
+      <td>Markdown source , metadata and template files</td>
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
+        <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111">Plain Text File</a>
+        <a href="src">src</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
-      </th>
-      <td>12602</td>
-    </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/license">license</a>
+        <a class="fa fa-external-link" href="http://schema.org/hasPart">hasPart</a>
       </th>
-      <td>https://creativecommons.org/licenses/by/3.0/au/</td>
+      <td>
+        <a href="#src/LICENSE">MIT License</a>
+        , 
+        <a href="#src/README.md">src/README.md</a>
+        , 
+        <a href="#src/bibliography.bib">src/bibliography.bib</a>
+        , 
+        <a href="#src/bibliography.csl">src/bibliography.csl</a>
+        , 
+        <a href="#src/makefile">src/makefile</a>
+        , 
+        <a href="#src/metadata.yaml">src/metadata.yaml</a>
+        , 
+        <a href="#src/paper.md">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</a>
+        , 
+        <a href="#src/template.latex">src/template.latex</a>
+        , 
+        <a href="#src/temporal_coverage.png">src/temporal_coverage.png</a>
+        , 
+        <a href="#src/template.html">src/template.html</a>
+      </td>
     </tr>
   </table>
+  <iframe width="80%" height="90%" src="src/README.md" border="1"></iframe>
   <hr></hr>
-  <table class="table" id="bibliography.csl">
+  <h1>Files: </h1>
+  <hr></hr>
+  <table class="table" id="src/LICENSE">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -351,18 +370,24 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/MediaObject">File</a>
       </td>
     </tr>
+    <tr>
+      <th width="20%">
+        <a class="fa fa-external-link" href="http://schema.org/name">name</a>
+      </th>
+      <td>MIT License</td>
+    </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>Citation definition. Modified by Peter Sefton to always show a URL for each reference, but needs more work as it is duplicating URLs</td>
+      <td>License for the template code used to generate PDF</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="bibliography.csl">bibliography.csl</a>
+        <a href="src/LICENSE">LICENSE</a>
       </td>
     </tr>
     <tr>
@@ -370,27 +395,21 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/101" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/101">Extensible Markup Language</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111">Plain Text File</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>11379</td>
-    </tr>
-    <tr>
-      <th width="20%"> Contributor</th>
-      <td>
-        <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
-      </td>
+      <td>1072</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/license">license</a>
       </th>
       <td>
-        <a href="#LICENSE">MIT License</a>
+        <a href="#src/LICENSE">MIT License</a>
       </td>
     </tr>
     <tr>
@@ -401,7 +420,7 @@ A machine-readable version of this page is available:
     </tr>
   </table>
   <hr></hr>
-  <table class="table" id="makefile">
+  <table class="table" id="src/README.md">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -413,14 +432,14 @@ A machine-readable version of this page is available:
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>Part of the IEEE Paper Template for Pandoc</td>
+      <td>README file for IEEE Pandoc Template</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="makefile">makefile</a>
+        <a href="src/README.md">README.md</a>
       </td>
     </tr>
     <tr>
@@ -435,14 +454,14 @@ A machine-readable version of this page is available:
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>411</td>
+      <td>2527</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/license">license</a>
       </th>
       <td>
-        <a href="#LICENSE">MIT License</a>
+        <a href="#src/LICENSE">MIT License</a>
       </td>
     </tr>
     <tr>
@@ -453,7 +472,7 @@ A machine-readable version of this page is available:
     </tr>
   </table>
   <hr></hr>
-  <table class="table" id="metadata.yaml">
+  <table class="table" id="src/bibliography.bib">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -465,28 +484,14 @@ A machine-readable version of this page is available:
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>Metadata template from IEEE Paper Template for Pandoc filled out with author names, abstract &amp; keywords</td>
-    </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/creator">creator</a>
-      </th>
-      <td>
-        <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
-        , 
-        <a href="#https://orcid.org/0000-0001-5152-5307">Michael Lynch</a>
-        , 
-        <a href="# https://orcid.org/0000-0002-0074-112X">Gerard Devine</a>
-        , 
-        <a href="#https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=">Duncan Loxton</a>
-      </td>
+      <td>References for the submission</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="metadata.yaml">metadata.yaml</a>
+        <a href="src/bibliography.bib">bibliography.bib</a>
       </td>
     </tr>
     <tr>
@@ -494,14 +499,14 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/818" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/818">YAML</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111">Plain Text File</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>1625</td>
+      <td>12602</td>
     </tr>
     <tr>
       <th width="20%">
@@ -511,7 +516,7 @@ A machine-readable version of this page is available:
     </tr>
   </table>
   <hr></hr>
-  <table class="table" id="paper.md">
+  <table class="table" id="src/bibliography.csl">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -519,24 +524,18 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/MediaObject">File</a>
       </td>
     </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/name">name</a>
-      </th>
-      <td>DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</td>
-    </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>Markdown source file</td>
+      <td>Citation definition. Modified by Peter Sefton to always show a URL for each reference, but needs more work as it is duplicating URLs</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="paper.md">paper.md</a>
+        <a href="src/bibliography.csl">bibliography.csl</a>
       </td>
     </tr>
     <tr>
@@ -544,30 +543,38 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111">Plain Text File</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/101" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/101">Extensible Markup Language</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>21054</td>
+      <td>11379</td>
+    </tr>
+    <tr>
+      <th width="20%"> Contributor</th>
+      <td>
+        <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
+      </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/license">license</a>
       </th>
-      <td>https://creativecommons.org/licenses/by/3.0/au/</td>
+      <td>
+        <a href="#src/LICENSE">MIT License</a>
+      </td>
     </tr>
     <tr>
-      <th width="20%">relatedMedia</th>
+      <th width="20%">outputOf</th>
       <td>
-        <a href="#paper.md">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</a>
+        <a href="#https://github.com/stsewd/ieee-pandoc-template">IEEE Paper Template for Pandoc</a>
       </td>
     </tr>
   </table>
   <hr></hr>
-  <table class="table" id="template.latex">
+  <table class="table" id="src/makefile">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -579,14 +586,14 @@ A machine-readable version of this page is available:
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>LaTeX template for generating an IEEE paper from paper.md. Modified by Peter Seftont to highlight links in the PDF on screen</td>
+      <td>Part of the IEEE Paper Template for Pandoc</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="template.latex">template.latex</a>
+        <a href="src/makefile">makefile</a>
       </td>
     </tr>
     <tr>
@@ -594,26 +601,22 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/280" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/280">LaTeX (Master document)</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111">Plain Text File</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>7717</td>
-    </tr>
-    <tr>
-      <th width="20%"> Contributor</th>
-      <td>
-        <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
-      </td>
+      <td>411</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/license">license</a>
       </th>
-      <td>https://creativecommons.org/licenses/by/3.0/au/</td>
+      <td>
+        <a href="#src/LICENSE">MIT License</a>
+      </td>
     </tr>
     <tr>
       <th width="20%">outputOf</th>
@@ -623,7 +626,7 @@ A machine-readable version of this page is available:
     </tr>
   </table>
   <hr></hr>
-  <table class="table" id="temporal_coverage.png">
+  <table class="table" id="src/metadata.yaml">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -635,7 +638,7 @@ A machine-readable version of this page is available:
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>Screenshot from &lt;https://data.research.uts.edu.au/examples/v0.2/sample/&gt;</td>
+      <td>Metadata template from IEEE Paper Template for Pandoc filled out with author names, abstract &amp; keywords</td>
     </tr>
     <tr>
       <th width="20%">
@@ -643,6 +646,12 @@ A machine-readable version of this page is available:
       </th>
       <td>
         <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
+        , 
+        <a href="#https://orcid.org/0000-0001-5152-5307">Michael Lynch</a>
+        , 
+        <a href="# https://orcid.org/0000-0002-0074-112X">Gerard Devine</a>
+        , 
+        <a href="#https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=">Duncan Loxton</a>
       </td>
     </tr>
     <tr>
@@ -650,7 +659,7 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="temporal_coverage.png">temporal_coverage.png</a>
+        <a href="src/metadata.yaml">metadata.yaml</a>
       </td>
     </tr>
     <tr>
@@ -658,18 +667,24 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/13" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/13">Portable Network Graphics</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/818" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/818">YAML</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>15998</td>
+      <td>1625</td>
+    </tr>
+    <tr>
+      <th width="20%">
+        <a class="fa fa-external-link" href="http://schema.org/license">license</a>
+      </th>
+      <td>https://creativecommons.org/licenses/by/3.0/au/</td>
     </tr>
   </table>
   <hr></hr>
-  <table class="table" id="template.html">
+  <table class="table" id="src/paper.md">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -679,24 +694,22 @@ A machine-readable version of this page is available:
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/description">description</a>
+        <a class="fa fa-external-link" href="http://schema.org/name">name</a>
       </th>
-      <td>HTML Template</td>
+      <td>DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</td>
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/creator">creator</a>
+        <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>
-        <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
-      </td>
+      <td>Markdown source file</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="template.html">template.html</a>
+        <a href="src/paper.md">paper.md</a>
       </td>
     </tr>
     <tr>
@@ -704,14 +717,14 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/96" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/96">Hypertext Markup Language</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/x-fmt/111">Plain Text File</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>607</td>
+      <td>21054</td>
     </tr>
     <tr>
       <th width="20%">
@@ -719,52 +732,15 @@ A machine-readable version of this page is available:
       </th>
       <td>https://creativecommons.org/licenses/by/3.0/au/</td>
     </tr>
-  </table>
-  <hr></hr>
-  <table class="table" id="build">
-    <tr></tr>
-    <tr>
-      <th width="20%">@type</th>
-      <td>
-        <a class="fa fa-external-link" href="http://schema.org/Dataset">Dataset</a>
-      </td>
-    </tr>
     <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/name">name</a>
-      </th>
-      <td> Directory of automatically created files</td>
-    </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/description">description</a>
-      </th>
-      <td>Contains a PDF version of source file</td>
-    </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
-      </th>
-      <td>
-        <a href="build">build</a>
-      </td>
-    </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/hasPart">hasPart</a>
-      </th>
+      <th width="20%">relatedMedia</th>
       <td>
-        <a href="#build/paper.pdf">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (PDF)</a>
-        , 
-        <a href="#build/paper.html">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (HTML)</a>
-        , 
-        <a href="#build/temporal_coverage.png">build/temporal_coverage.png</a>
+        <a href="#src/paper.md">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</a>
       </td>
     </tr>
   </table>
-  <h1>Files: </h1>
   <hr></hr>
-  <table class="table" id="build/paper.pdf">
+  <table class="table" id="src/template.latex">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -772,38 +748,18 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/MediaObject">File</a>
       </td>
     </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/name">name</a>
-      </th>
-      <td>DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (PDF)</td>
-    </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>PDF verision of DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</td>
-    </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/creator">creator</a>
-      </th>
-      <td>
-        <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
-        , 
-        <a href="#https://orcid.org/0000-0001-5152-5307">Michael Lynch</a>
-        , 
-        <a href="# https://orcid.org/0000-0002-0074-112X">Gerard Devine</a>
-        , 
-        <a href="#https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=">Duncan Loxton</a>
-      </td>
+      <td>LaTeX template for generating an IEEE paper from paper.md. Modified by Peter Seftont to highlight links in the PDF on screen</td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="build/paper.pdf">paper.pdf</a>
+        <a href="src/template.latex">template.latex</a>
       </td>
     </tr>
     <tr>
@@ -811,21 +767,19 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/19" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/19">Acrobat PDF 1.5 - Portable Document Format</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/280" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/280">LaTeX (Master document)</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>289278</td>
+      <td>7717</td>
     </tr>
     <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/encodesCreativeWork">encodesCreativeWork</a>
-      </th>
+      <th width="20%"> Contributor</th>
       <td>
-        <a href="#paper.md">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</a>
+        <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
       </td>
     </tr>
     <tr>
@@ -834,9 +788,15 @@ A machine-readable version of this page is available:
       </th>
       <td>https://creativecommons.org/licenses/by/3.0/au/</td>
     </tr>
+    <tr>
+      <th width="20%">outputOf</th>
+      <td>
+        <a href="#https://github.com/stsewd/ieee-pandoc-template">IEEE Paper Template for Pandoc</a>
+      </td>
+    </tr>
   </table>
   <hr></hr>
-  <table class="table" id="build/paper.html">
+  <table class="table" id="src/temporal_coverage.png">
     <tr></tr>
     <tr>
       <th width="20%">@type</th>
@@ -844,17 +804,11 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/MediaObject">File</a>
       </td>
     </tr>
-    <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/name">name</a>
-      </th>
-      <td>DataCrate: a method of packaging, distributing, displaying and archiving Research Objects (HTML)</td>
-    </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>HTML Version</td>
+      <td>Screenshot from &lt;https://data.research.uts.edu.au/examples/v0.2/sample/&gt;</td>
     </tr>
     <tr>
       <th width="20%">
@@ -862,12 +816,6 @@ A machine-readable version of this page is available:
       </th>
       <td>
         <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
-        , 
-        <a href="#https://orcid.org/0000-0001-5152-5307">Michael Lynch</a>
-        , 
-        <a href="# https://orcid.org/0000-0002-0074-112X">Gerard Devine</a>
-        , 
-        <a href="#https://email.itd.uts.edu.au/webapps/directory/entry.mason?entry=dWlkPTExODAyNSxvdT1TdGFmZixvPXV0cy5lZHUuYXUsbz1VVFM=">Duncan Loxton</a>
       </td>
     </tr>
     <tr>
@@ -875,7 +823,7 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="build/paper.html">paper.html</a>
+        <a href="src/temporal_coverage.png">temporal_coverage.png</a>
       </td>
     </tr>
     <tr>
@@ -883,37 +831,37 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/96" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/96">Hypertext Markup Language</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/13" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/13">Portable Network Graphics</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>28571</td>
+      <td>15998</td>
     </tr>
+  </table>
+  <hr></hr>
+  <table class="table" id="src/template.html">
+    <tr></tr>
     <tr>
-      <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/encodesCreativeWork">encodesCreativeWork</a>
-      </th>
+      <th width="20%">@type</th>
       <td>
-        <a href="#paper.md">DataCrate: a method of packaging, distributing, displaying and archiving Research Objects</a>
+        <a class="fa fa-external-link" href="http://schema.org/MediaObject">File</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/license">license</a>
+        <a class="fa fa-external-link" href="http://schema.org/description">description</a>
       </th>
-      <td>https://creativecommons.org/licenses/by/3.0/au/</td>
+      <td>HTML Template</td>
     </tr>
-  </table>
-  <hr></hr>
-  <table class="table" id="build/temporal_coverage.png">
-    <tr></tr>
     <tr>
-      <th width="20%">@type</th>
+      <th width="20%">
+        <a class="fa fa-external-link" href="http://schema.org/creator">creator</a>
+      </th>
       <td>
-        <a class="fa fa-external-link" href="http://schema.org/MediaObject">File</a>
+        <a href="# https://orcid.org/0000-0002-3545-944X">Peter Sefton</a>
       </td>
     </tr>
     <tr>
@@ -921,7 +869,7 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/contentUrl">path</a>
       </th>
       <td>
-        <a href="build/temporal_coverage.png">temporal_coverage.png</a>
+        <a href="src/template.html">template.html</a>
       </td>
     </tr>
     <tr>
@@ -929,22 +877,20 @@ A machine-readable version of this page is available:
         <a class="fa fa-external-link" href="http://schema.org/encodingFormat">encodingFormat</a>
       </th>
       <td>
-        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/13" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/13">Portable Network Graphics</a>
+        <a href="http://www.nationalarchives.gov.uk/PRONOM/fmt/96" class="fa fa-external-link" title="http://www.nationalarchives.gov.uk/PRONOM/fmt/96">Hypertext Markup Language</a>
       </td>
     </tr>
     <tr>
       <th width="20%">
         <a class="fa fa-external-link" href="http://schema.org/contentSize">contentSize</a>
       </th>
-      <td>15998</td>
+      <td>607</td>
     </tr>
     <tr>
       <th width="20%">
-        <a class="fa fa-external-link" href="http://schema.org/sameAs">sameAs</a>
+        <a class="fa fa-external-link" href="http://schema.org/license">license</a>
       </th>
-      <td>
-        <a href="#temporal_coverage.png">temporal_coverage.png</a>
-      </td>
+      <td>https://creativecommons.org/licenses/by/3.0/au/</td>
     </tr>
   </table>
   <h1>
diff --git a/build/paper.html b/paper.html
similarity index 100%
rename from build/paper.html
rename to paper.html
diff --git a/build/paper.pdf b/paper.pdf
similarity index 99%
rename from build/paper.pdf
rename to paper.pdf
index 46bc71a4036f9fde112872273b981af1cfaa47d2..6303cf487a1b4c06371dae18fc81042eef9255f9 100644
Binary files a/build/paper.pdf and b/paper.pdf differ
diff --git a/LICENSE b/src/LICENSE
similarity index 100%
rename from LICENSE
rename to src/LICENSE
diff --git a/README.md b/src/README.md
similarity index 100%
rename from README.md
rename to src/README.md
diff --git a/bibliography.bib b/src/bibliography.bib
similarity index 100%
rename from bibliography.bib
rename to src/bibliography.bib
diff --git a/bibliography.csl b/src/bibliography.csl
similarity index 100%
rename from bibliography.csl
rename to src/bibliography.csl
diff --git a/makefile b/src/makefile
similarity index 92%
rename from makefile
rename to src/makefile
index 25cbfd45a4dc8cdfaeba64642862c32eea71e98c..9dbc95675d4270bf362db728c34097e8a67f18ae 100644
--- a/makefile
+++ b/src/makefile
@@ -1,7 +1,7 @@
 FILES = paper.md \
 		metadata.yaml
 
-OUTPUT = build
+OUTPUT = ..
 
 FLAGS = --bibliography=bibliography.bib \
 		--csl=bibliography.csl \
@@ -19,6 +19,6 @@ pdf:
 
 html:
 	pandoc -o $(OUTPUT)/paper.html $(FLAGS) $(FLAGS_HTML)  $(FILES)
-	cp *.png build/
+	cp *.png $(OUTPUT)
 clean:
 	rm build/*
diff --git a/metadata.yaml b/src/metadata.yaml
similarity index 100%
rename from metadata.yaml
rename to src/metadata.yaml
diff --git a/paper.md b/src/paper.md
similarity index 100%
rename from paper.md
rename to src/paper.md
diff --git a/template.html b/src/template.html
similarity index 100%
rename from template.html
rename to src/template.html
diff --git a/template.latex b/src/template.latex
similarity index 100%
rename from template.latex
rename to src/template.latex
diff --git a/build/temporal_coverage.png b/src/temporal_coverage.png
similarity index 100%
rename from build/temporal_coverage.png
rename to src/temporal_coverage.png
diff --git a/temporal_coverage.png b/temporal_coverage.png
new file mode 100644
index 0000000000000000000000000000000000000000..1cfb9a3574a670a6367b472e1f514f9a9aa0f743
Binary files /dev/null and b/temporal_coverage.png differ
diff --git a/build/~$CATALOG_build.xlsx b/~$CATALOG_build.xlsx
similarity index 100%
rename from build/~$CATALOG_build.xlsx
rename to ~$CATALOG_build.xlsx